Cooperativity in Hydrogen‐Bonded Macrocycles Derived from Nucleobases

Quantum chemical analyses reveal that introducing rigid linear π-conjugated acetylene linkers into a supramolecular building block hampers the cooperative self-assembly of hydrogen-bonded macrocycles. This effect originates from the electron abstracting capability of the linker and becomes amplified when the size of the linker increases.

Abstract

Introducing a rigid linear π-conjugated acetylene linker into a supramolecular building block consisting of a hydrogen-bond donor side and a hydrogen-bond acceptor side yields a decrease in cooperativity in the resulting formed quartet. This follows from our Kohn-Sham molecular orbital and Voronoi deformation density analyses of hydrogen-bonded macrocycles based on guanine and cytosine nucleobases. The acetylene linker abstracts electron density from the hydrogen-bond acceptor and donor, making the hydrogen-bond acceptor more negatively charged and the hydrogen-bond donor more positively charged and hence suppressing the donor–acceptor charge transfer interaction between the interacting fragments. This, ultimately, hampers the cooperativity in the hydrogen-bonded macrocycle. We envision that these findings could open the door to new design principles for the development of novel hydrogen-bond supramolecular macrocycles.

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